Schedule

Time (PDT)	Session	Presenting author(s)	Title/Event	YouTube
07:30	Opening Session		Opening Session
08:00	Keynote	Sandrine Dudoit	Learning from Data in Single-Cell Transcriptomics
09:00	Short talks track	Avi Srivastava Alan Aw Cindy Fang	Single-cell Sequencing Track
09:00	Short talks track	Marouen Ben Guebila Noriaki Sato Lauren Marie Harmon Jacob Morrison	Systems Biology/Epigenetics Track
10:00	Short talks track	Gabriel E Hoffman Wes Wilson Stefano Mangiola Simone Tiberi	Single-cell Sequencing Track
10:00	Short talks track	Samuel Gamboa Ludwig Geistlinger Ian Smith Ji-Eun Park	Metagenomics/Cancer Track
11:00	Keynote	Bhramar Mukherjee	Using Electronic Health Records and Phenome-wide Association Studies for COVID-19 Research
12:00	Lunch break		Lunch Break
13:15	Workshop	Chloe Anya Mirzayi	Epidemiology for Bioinformaticians**
13:15	Package demo	Nils Eling	A Framework For Multiplexed Image Processing And Spatial Analysis***
13:15	Workshop	James MacDonald	Introduction to Bioconductor annotation resources*
14:15	Package demo	Wancen Mu	Nullranges: Modular Workflow For Overlap Enrichment**
15:30	Package demo	Lori Ann Shepherd	Bioconductor Experimenthub And Annotationhub -- How To Use And How To Contribute*
15:30	Workshop	Nitesh Turaga	Bioconductor Docker Images For Multi-Node Parallel Computing On The Cloud***
15:30	Package demo	Gabriel J. Odom	Identifying Differentially Methylated Genomic Regions With Comethdmr**
16:30	Package demo	Qian Liu	Rcwl/RcwlPipelines: Use R To Build, Read, Write, And execute CWL Workflows***
16:30	Package demo	Ellis Patrick	Spatial Analysis Of High Dimensional In Situ Cytometry Data***

Workshop/demo levels: * - beginner, recommended for starting with Bioconductor; ** - intermediate; *** - advanced.

Thursday, July 28, 2022

Time (PDT)	Session	Presenting author(s)	Title/Event	YouTube
08:00	Keynote	Amy Willis	Modeling complex measurement error in microbiome experiments
09:00	Short talks track	Josh Michael Stolz Louise A. Huuki-Myers Paul T Shannon Erik Scott Wright	RNA Track
09:00	Short talks track	Abby Spangler Simone Tiberi Lukas M Weber Athena Chen	Spatial Genomics Track
10:00	Meet the CAB		Meet the Community Advisory Board
10:00	Posters		Moderna Poster Session
11:00	Keynote	Jalees Rehman	Assessing cellular heterogeneity across time and disease
11:45	Awards		BioC Awards Ceremony
12:10	Lunch break		Lunch Break
13:15	Workshop	Christopher Bernard Eeles	Pharmacogx 3.0: Data Structures And Methods For Discovering Molecular Biomarkers Of Response To Drug Combination Therapy In Precision Oncology**
13:15	Workshop	Marcel Ramos	Multi-omic Integration Of Cbioportal And TCGA Data With Multiassayexperiment**
13:15	Package demo	Zuguang Gu	Cola: A General Framework For Consensus Partitioning**
14:15	Package demo	Lambda Moses	SpatialFeatureExperiment: An S4 Class Bringing Geospatial Tools To Spatial Omics***
15:30	Package demo	Erdal Cosgun	Deploy Custom Bioconductor Data Science VM On Azure With Linux Extension***
15:30	Package demo	Xinge Wang	Analyzing Cellular Heterogeneity Across Time And Across Biological Interventions***
15:30	Workshop	Stefano Mangiola, Maria Doyle	Tidy Transcriptomics For Single-Cell RNA Sequencing Analyses**
16:30	Package demo	Jenny Drnevich	Introduction To Using Bioconductor’s Carpentries-Style Training Materials*
16:30	Package demo	Martin Morgan	Accessing Human Cell Atlas Data Locally And On The Anvil Cloud**

Workshop/demo levels: * - beginner, recommended for starting with Bioconductor; ** - intermediate; *** - advanced.

Friday, July 29, 2022

Time (PDT)	Session	Presenting author(s)	Title/Event	YouTube
08:00	Keynote	Mine Çetinkaya-Rundel	Hello, Quarto!
08:50	Meet the TAB/core		Meet the TAB/core
09:00	Short talks track	Pau Badia i Mompel Nikolas Pechlivanis Ludwig Geistlinger	Multi-omics/Enrichment Track
10:00	Short talks track	Alexandru Mahmoud Hervé Pagès Qian Liu Nitesh Turaga	Bioinformatics workflows/Infrastructure Track
10:00	Lightning talks		Lightning talks
11:00	Keynote	Scott Furlan	Bringing single cell genomics closer to the clinic for patients with leukemia
12:10	Lunch break		Lunch Break
13:15	Workshop	Aidan Hunter Lakshman	Comparative Genomics with DECIPHER and SynExtend***
13:15	Birds of a Feather	Kevin Rue-Albrecht, Mike Smith, Aedin Culhane	Developer’s Welcome
13:15	Birds of a Feather	Daniela Cassol, Estefania Mancini, Lori Shepard, Hedia Tnani, Janani Ravi, Susan Holmes	Bioconductor Ladies
13:15	Package demo	Maddy Griswold	SpatialOmicsOverlay: Overlay of Structurally Profiled Regions of Interest on GeoMx DSP Tissue Images***
14:15	Posters		Nanostring Poster Session
14:15	Package demo	Euphy Wu	SEESAW: Statistical Estimation Of Allelic Expression Using Salmon And Swish**
15:30	Package demo	Kristyna Kupkova	Genomicdistributions: Fast, Easy, And Flexible Summary And Visualization Of Genomic Regions*
15:30	Package demo	Vincent James Carey	Using And Extending Biomedical Ontologies With Ontoproc**
15:30	Package demo	Garth Kong	CITE-Viz: Reproducing The Flow Cytometry Workflow Using CITE-Seq Data***
16:30	Package demo	Wes Wilson	Using Tercen To Run Bioconductor Pipelines: Save Time And Share Data Easy With Collaborators.***
16:30	Package demo	Sehyun Oh	Genomicsupersignature: Interpretation Of RNA-Seq Experiments Through Robust, Efficient Comparison To Public Databases**
17:30	Closing Ceremony		Closing Ceremony

Workshop/demo levels: * - beginner, recommended for starting with Bioconductor; ** - intermediate; *** - advanced.