Workshops & package demos

0n orchestra

  1. Go to Orchestra.
  2. Log in.
  3. Search for the workshop of interest.
  4. Click “Launch” (may take a minute or two).
  5. Follow instructions.

All workshops and demos by level

Beginner

Recommended for starting with Bioconductor.
Session type Title Details Source Youtube
Workshop Introduction to Bioconductor annotation resources*
Package demo Bioconductor Experimenthub And Annotationhub -- How To Use And How To Contribute*
Package demo Introduction To Using Bioconductor’s Carpentries-Style Training Materials*
Package demo Genomicdistributions: Fast, Easy, And Flexible Summary And Visualization Of Genomic Regions*

Intermediate

Session type Title Details Source Youtube
Workshop Epidemiology for Bioinformaticians**
Package demo Nullranges: Modular Workflow For Overlap Enrichment**
Package demo Identifying Differentially Methylated Genomic Regions With Comethdmr**
Package demo Cola: A General Framework For Consensus Partitioning**
Workshop Pharmacogx 3.0: Data Structures And Methods For Discovering Molecular Biomarkers Of Response To Drug Combination Therapy In Precision Oncology**
Workshop Multi-omic Integration Of Cbioportal And TCGA Data With Multiassayexperiment**
Workshop Tidy Transcriptomics For Single-Cell RNA Sequencing Analyses**
Package demo Accessing Human Cell Atlas Data Locally And On The Anvil Cloud**
Package demo SEESAW: Statistical Estimation Of Allelic Expression Using Salmon And Swish**
Package demo Using And Extending Biomedical Ontologies With Ontoproc**
Package demo Genomicsupersignature: Interpretation Of RNA-Seq Experiments Through Robust, Efficient Comparison To Public Databases**

Advanced

Session type Title Details Source Youtube
Package demo A Framework For Multiplexed Image Processing And Spatial Analysis***
Workshop Bioconductor Docker Images For Multi-Node Parallel Computing On The Cloud***
Package demo Spatial Analysis Of High Dimensional In Situ Cytometry Data***
Package demo Rcwl/RcwlPipelines: Use R To Build, Read, Write, And execute CWL Workflows***
Package demo SpatialFeatureExperiment: An S4 Class Bringing Geospatial Tools To Spatial Omics***
Package demo Deploy Custom Bioconductor Data Science VM On Azure With Linux Extension***
Package demo Analyzing Cellular Heterogeneity Across Time And Across Biological Interventions***
Package demo SpatialOmicsOverlay: Overlay of Structurally Profiled Regions of Interest on GeoMx DSP Tissue Images***
Workshop Comparative Genomics with DECIPHER and SynExtend***
Package demo CITE-Viz: Reproducing The Flow Cytometry Workflow Using CITE-Seq Data***
Package demo Using Tercen To Run Bioconductor Pipelines: Save Time And Share Data Easy With Collaborators.***