Systems Biology/Epigenetics Track Netzoor: A Software Infrastructure For The Inference And Analysis Of Gene Regulatory Networks wcGeneSummary: Text Mining And Annotating Gene Cluster Chromophobe: A Framework For Comparative And Contrastive Evaluation Of Chromatin State Models Bisplotti: A One Stop Shop For All Your Whole-Genome DNA Methylation Sequencing Plotting Needs
Spatial Genomics Track Large-Scale Analysis Of The Molecular Anatomy Of The Dorsolateral Prefrontal Cortex (DLPFC) Through The Use Of Unsupervised Methods With Spatial RNA-seq A Novel Analysis Framework To Discover Spatially Variable Genes nnSVG: Scalable Identification Of Spatially Variable Genes Using Nearest-Neighbor Gaussian Processes Detecting And Quantifying Antibody Reactivity In Phip-Seq Data With BEER
Single-cell Sequencing Track Dreamlet: Scalable Differential Expression Analysis Of Single Cell Transcriptomics Datasets With Complex Study Designs Whats In A GEM? That Which We Call A Single Cell, By Another Method Would Not Smell As Sweet. Robust Differential Composition And Variability Analysis For Multisample Cell Omics A Novel Method To Identify Differentially Regulated Genes
Single-cell Sequencing Track Characterizing Cellular Heterogeneity In Chromatin State With scCUT&Tag-pro And scChromHMM General Non-Parametric Tests Of Differential Gene Expression For Single Cell Genomics Predictive Modelling Of Dataset-Specific Single-Cell RNA-Seq Pipeline Performance
RNA Track qsvaR Data-Driven Identification Of Total RNA Expression Genes (Tregs) For Estimation Of RNA Abundance In Heterogeneous Cell Types igvR: Interactive Genome Exploration From R Evolution Of The DECIPHER Package For Comparative Genomics
Multi-omics/Enrichment Track Decoupler: Ensemble Of Computational Methods To Infer Biological Activities From Omics Data Detecting SARS‑Cov‑2 Lineages And Mutational Load In Municipal Wastewater And A Use‑Case In The Metropolitan Area Of Thessaloniki, Greece BioPlex: An Integrated Data Product For The Analysis Of Human Protein-Protein Interactions
Metagenomics/Cancer Track A Resource Of Microbiome Benchmark Datasets With Biological Ground Truth BugSigDB: Accelerating Human Microbiome Research By Systematic Comparison To Published Microbial Signatures Distance Metric Learning On The L1000 Connectivity Map Testing For Associations Between Risk Factors And Mutational Signatures Via Bayesian Dirichlet-Multinomial Hierarchical Model
Bioinformatics workflows/Infrastructure Track Bioconductor Helm Chart: A Customizable Deployment Stack For Bioconductor Rstudio Sparsearray Objects: A New Container For Efficient In-Memory Representation Of Multidimensional Sparse Arrays Reusedata: An Open-Source, Open-Development Tool For Reusable And Reproducible Genomic Data Management Using Bioconductor On GPU Enabled Cloud Vms
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